PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG484800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 380aa    MW: 40473.2 Da    PI: 7.3079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG484800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13309354655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Pavir.2KG484800.1.p 309 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 354
                          689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16306365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.04E-13307358No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16308375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMAS SGLLRYRSAP SSVLGELCED FLPAGARAAS PDAGADGVFA  60
RFLADHHIRD DKPAPAPAPA AGHFASEADM ASQQQQQMMF HSQHQHQEMV DAKSGLYRTV  120
SSGMETASAA GAGVGSSNLA RQSSSPAGFL DHLNMENGYG AMLRAGMSMG FRDGSSAATA  180
DSFAGGGSRL KGQLSFSSRQ GSLMSQISEM DSEEVGGSSP EAAGAGRGYI PRYAMGSGWE  240
DSSSLMSENL SGMKRPRDSL EPGQNGLAHQ FSLPKTSSEM ASIEKFLQFQ DAVPCKIRAK  300
RGCATHPRSI AERVRRTKIS ERIRKLQELV PNMDKQTNTS DMLDLAVDYI KDLQKQVKVL  360
KESNANCTCS ASKNQQHSD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.34050.0callus| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957993.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLK3ZU850.0K3ZU85_SETIT; Uncharacterized protein
STRINGSi030166m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-63bHLH family protein